CalibraCurve - Calibration curves for targeted proteomics, lipidomics and metabolomics data
CalibraCurve is a computational tool designed to generate calibration curves for targeted mass spectrometry-based quantitative data. It is applicable to various omics disciplines, including proteomics, lipidomics, and metabolomics. The package also offers functionalities for data and calibration curve visualization and concentration prediction from new datasets based on the established curves.
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proteomicslipidomicsmetabolomicsregressionmassspectrometryvisualizationassayscalibrationdynamic-linear-rangesquantification-limitstargeted-proteomics
6.15 score 5 stars 7 scripts 256 downloadsbppg - Bipartite peptide-protein graphs
This package contains functionality to create and characterize bipartite graphs that model the relationship between peptides and proteins in bottom-up proteomics. With these graphs, protein ratios (fold change between two sample groups) are calculated from the respective measured peptide ratios. The main aim is to make use of quantitative information contained in shared peptides and making it possible to quantify proteins without shared peptides. Further, the package offers general analysis of peptide and protein relationships using bipartite graphs and visualization for these graphs.
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proteomicsgraphandnetworkmassspectrometrymultiplecomparisonvisualization
4.08 score 1 scripts